ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000770398.1 ENST00000770398.1_481_509_+ 481–509 12224.00 43.38 31.02 100.0 ENST00000770398 lncRNA K562 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 48.00 0.17 0.12 100.0 ENST00000770398 lncRNA K562 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 3238.00 4.95 8.22 100.0 ENST00000771298 lncRNA K562 (Cell line)
ENST00000771298.1 ENST00000771298.1_448_479_+ 448–479 15.00 0.02 0.04 100.0 ENST00000771298 lncRNA K562 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 19771.00 30.24 50.18 63.77 ENST00000771298 lncRNA K562 (Cell line)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 281.00 0.43 0.71 100.0 ENST00000771298 lncRNA K562 (Cell line)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 1973.00 17.22 5.01 100.0 ENST00000772672 lncRNA K562 (Cell line)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 1.00 0.01 0.00 100.0 ENST00000772672 lncRNA K562 (Cell line)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 3556.00 31.03 9.02 100.0 ENST00000772672 lncRNA K562 (Cell line)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 551.00 38.05 1.40 100.0 ENST00000773843 lncRNA K562 (Cell line)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 14153.00 0.59 35.92 100.0 SNHG12-223 lncRNA K562 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 521039.00 21.74 1322.34 76.02 SNHG12-223 lncRNA K562 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 1835215.00 76.59 4657.58 98.28 SNHG12-223 lncRNA K562 (Cell line)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 1795.00 0.12 4.56 100.0 SNHG25-206 lncRNA K562 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 1388431.00 95.77 3523.69 96.84 SNHG25-206 lncRNA K562 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 113.00 0.01 0.29 100.0 SNHG25-206 lncRNA K562 (Cell line)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 253.44 0.02 0.64 56.95 SNHG25-206 lncRNA K562 (Cell line)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 350.83 0.02 0.89 66.7 SNHG25-206 lncRNA K562 (Cell line)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 296.23 0.02 0.75 33.89 SNHG25-206 lncRNA K562 (Cell line)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 1744.00 0.12 4.43 97.43 SNHG25-206 lncRNA K562 (Cell line)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 294.00 0.02 0.75 100.0 SNHG25-206 lncRNA K562 (Cell line)
ENST00000778783.1 ENST00000778783.1_84_171_+ 84–171 298.00 17.98 0.76 100.0 ENST00000778783 lncRNA K562 (Cell line)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 18.00 60.00 0.05 100.0 MIR155HG-205 lncRNA K562 (Cell line)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 52186.00 17.61 132.44 100.0 ENST00000785178 lncRNA K562 (Cell line)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 4231.00 7.98 10.74 63.18 ENST00000786284 lncRNA K562 (Cell line)