ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 13857.00 26.14 35.17 100.0 ENST00000786284 lncRNA K562 (Cell line)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 2466.00 4.65 6.26 54.14 ENST00000786284 lncRNA K562 (Cell line)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 90648.00 80.73 230.05 94.91 ENST00000788343 lncRNA K562 (Cell line)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 8236.39 29.46 20.90 37.16 ENST00000797550 lncRNA K562 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 4510.40 16.13 11.45 20.35 ENST00000797550 lncRNA K562 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 905.00 3.24 2.30 84.26 ENST00000797550 lncRNA K562 (Cell line)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 3795.00 75.69 9.63 93.2 MIR181A1HG-212 lncRNA K562 (Cell line)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 13466.00 53.72 34.18 100.0 C19orf48P-218 lncRNA K562 (Cell line)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 6313.00 25.19 16.02 100.0 C19orf48P-218 lncRNA K562 (Cell line)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 5348.00 25.25 13.57 100.0 ENST00000817026 lncRNA K562 (Cell line)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 1546.59 2.43 3.93 37.15 ENST00000823279 lncRNA K562 (Cell line)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 567.00 0.89 1.44 100.0 ENST00000823279 lncRNA K562 (Cell line)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 650.05 1.02 1.65 53.2 ENST00000823279 lncRNA K562 (Cell line)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 2035.21 3.20 5.17 61.54 ENST00000823279 lncRNA K562 (Cell line)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 1364.00 2.14 3.46 100.0 ENST00000823279 lncRNA K562 (Cell line)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 5916.00 9.29 15.01 99.0 ENST00000823279 lncRNA K562 (Cell line)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 863.65 1.36 2.19 37.24 ENST00000823279 lncRNA K562 (Cell line)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 2166.00 3.40 5.50 80.67 ENST00000823279 lncRNA K562 (Cell line)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 3603.21 5.66 9.14 29.45 ENST00000823279 lncRNA K562 (Cell line)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 10186.83 16.00 25.85 62.86 ENST00000823801 lncRNA K562 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 460694.00 48.06 1169.19 100.0 GAS5-377 lncRNA K562 (Cell line)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 1445.00 0.15 3.67 100.0 GAS5-377 lncRNA K562 (Cell line)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 2193.00 0.23 5.57 100.0 GAS5-377 lncRNA K562 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 470197.00 49.05 1193.31 100.0 GAS5-377 lncRNA K562 (Cell line)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 1.00 5.88 0.00 100.0 MIR205HG-245 lncRNA K562 (Cell line)