ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 110.00 0.22 0.28 8.76 SNORD53B-201 snoRNA K562 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 21253.00 42.76 53.94 45.35 SNORD53B-201 snoRNA K562 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 1146.00 2.31 2.91 91.24 SNORD53B-201 snoRNA K562 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 2289.00 92.04 5.81 100.0 ENST00000578036 lncRNA K562 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 16419.00 86.06 41.67 100.0 RPL23A-207 protein coding K562 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 2579.00 90.52 6.55 100.0 MIR744-201 miRNA K562 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 10022.00 82.31 25.43 100.0 MIR378C-201 miRNA K562 (Cell line)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 18702.00 7.65 47.46 14.82 MIR142HG-201 lncRNA K562 (Cell line)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 5394.00 2.21 13.69 100.0 MIR142HG-201 lncRNA K562 (Cell line)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 82612.00 33.79 209.66 41.64 MIR142HG-201 lncRNA K562 (Cell line)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 1416.00 4.52 3.59 100.0 SNORD3C-201 snoRNA K562 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 414.85 0.29 1.05 60.83 RPL23A-208 retained intron K562 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 283.98 0.20 0.72 53.99 RPL23A-208 retained intron K562 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 49480.00 34.33 125.57 55.71 RPL23A-208 retained intron K562 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 92031.00 63.85 233.56 93.16 RPL23A-208 retained intron K562 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 146.00 0.11 0.37 16.76 RPL17-211 retained intron K562 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 252.00 0.20 0.64 2.83 RPL17-211 retained intron K562 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 2852.00 2.21 7.24 100.0 RPL17-211 retained intron K562 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 109538.00 85.04 278.00 99.83 RPL17-211 retained intron K562 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 8563.00 6.65 21.73 99.17 RPL17-211 retained intron K562 (Cell line)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 8832.00 30.12 22.41 93.57 ENST00000582320 lncRNA K562 (Cell line)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 13651.00 46.56 34.64 100.0 ENST00000582320 lncRNA K562 (Cell line)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 2015.00 6.87 5.11 100.0 ENST00000582320 lncRNA K562 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 4812.00 19.69 12.21 100.0 RPL17-214 retained intron K562 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 5098.92 20.86 12.94 34.89 RPL17-214 retained intron K562 (Cell line)