ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 6.00 15.38 0.02 100.0 SNHG14-220 retained intron K562 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 27010.00 99.73 68.55 100.0 TEKT4P2-201 transcribed unprocessed pseudogene K562 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 45872.00 81.82 116.42 98.14 RPL4-202 retained intron K562 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 2199.00 3.92 5.58 100.0 RPL4-202 retained intron K562 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 177.00 0.32 0.45 100.0 RPL4-202 retained intron K562 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 19.00 0.03 0.05 100.0 RPL4-202 retained intron K562 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 2986.00 5.33 7.58 100.0 RPL4-202 retained intron K562 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 2392.00 3.72 6.07 100.0 ENST00000563103 lncRNA K562 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 55931.00 71.61 141.95 100.0 RPL4-207 retained intron K562 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 889.00 1.14 2.26 100.0 RPL4-207 retained intron K562 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 24368.00 45.93 61.84 91.05 ENST00000565336 lncRNA K562 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 14824.00 27.94 37.62 88.85 ENST00000565336 lncRNA K562 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1545.00 3.38 3.92 100.0 RBMX-210 retained intron K562 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 426.00 0.93 1.08 100.0 RBMX-210 retained intron K562 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 714.00 1.56 1.81 100.0 RBMX-210 retained intron K562 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 38992.00 85.33 98.96 99.53 RBMX-210 retained intron K562 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 10405.00 67.33 26.41 100.0 RPL4-214 retained intron K562 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 362.00 2.34 0.92 100.0 RPL4-214 retained intron K562 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 19276.51 28.18 48.92 49.92 POLG-DT-202 lncRNA K562 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 24048.06 35.16 61.03 70.51 POLG-DT-202 lncRNA K562 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 1405.00 2.05 3.57 100.0 POLG-DT-202 lncRNA K562 (Cell line)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 3.00 0.00 0.01 100.0 ENST00000570843 lncRNA K562 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 2683.00 4.22 6.81 100.0 ENST00000570843 lncRNA K562 (Cell line)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 105.00 28.38 0.27 100.0 MIR497HG-207 lncRNA K562 (Cell line)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 400830.00 99.50 1017.26 99.71 MIR22HG-212 lncRNA K562 (Cell line)