ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 11199.40 45.82 28.42 65.81 RPL17-214 retained intron K562 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 782.00 0.04 1.98 100.0 SNORD43-201 snoRNA K562 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 2184256.00 98.62 5543.41 99.4 SNORD43-201 snoRNA K562 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 1020.00 0.05 2.59 100.0 SNORD43-201 snoRNA K562 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 770.00 74.18 1.95 100.0 MIR151B-201 miRNA K562 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 820.00 2.51 2.08 100.0 SNORD3A-201 snoRNA K562 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 2787.00 39.37 7.07 100.0 SNORD92-201 snoRNA K562 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 19781.00 46.74 50.20 100.0 NSRP1-214 protein coding K562 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 16544.00 39.09 41.99 88.99 NSRP1-214 protein coding K562 (Cell line)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 451.00 2.07 1.14 100.0 MIR23AHG-201 lncRNA K562 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1693.00 7.76 4.30 71.25 MIR23AHG-201 lncRNA K562 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 11046.00 50.61 28.03 94.59 MIR23AHG-201 lncRNA K562 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 827.00 3.79 2.10 88.73 MIR23AHG-201 lncRNA K562 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 421.00 1.93 1.07 67.15 MIR23AHG-201 lncRNA K562 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 237.00 44.55 0.60 100.0 ODAD3-204 nonsense mediated decay K562 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 140980.00 15.77 357.79 100.0 VMP1-217 retained intron K562 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 4526.00 0.51 11.49 100.0 VMP1-217 retained intron K562 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 571310.00 63.92 1449.92 79.13 VMP1-217 retained intron K562 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 4096.00 0.15 10.40 100.0 C19orf48P-203 retained intron K562 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 784513.80 28.84 1991.01 34.54 C19orf48P-203 retained intron K562 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1847459.08 67.91 4688.65 69.5 C19orf48P-203 retained intron K562 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 28643.00 1.05 72.69 90.63 C19orf48P-203 retained intron K562 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 2850.00 0.10 7.23 100.0 C19orf48P-203 retained intron K562 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 3.00 0.00 0.01 100.0 C19orf48P-203 retained intron K562 (Cell line)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 373.00 83.82 0.95 100.0 ENST00000597420 lncRNA K562 (Cell line)