ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385254.3 ENST00000385254.3_16_37_+ 16–37 38.00 28.79 0.10 100.0 MIR493-201 miRNA K562 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 135999.37 17.19 345.15 23.55 MIR182-201 miRNA K562 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 558429.71 70.60 1417.23 74.05 MIR182-201 miRNA K562 (Cell line)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 8.00 66.67 0.02 88.89 MIR100-201 miRNA K562 (Cell line)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 12130.00 93.22 30.78 100.0 MIR301A-201 miRNA K562 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 31.00 91.18 0.08 100.0 MIR130A-201 miRNA K562 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 3.00 8.82 0.01 60.0 MIR130A-201 miRNA K562 (Cell line)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 7208.00 96.93 18.29 99.31 MIRLET7F2-201 miRNA K562 (Cell line)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 1122.00 55.14 2.85 100.0 MIR652-201 miRNA K562 (Cell line)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 159.00 96.36 0.40 100.0 MIR653-201 miRNA K562 (Cell line)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 9348.00 70.93 23.72 100.0 MIR140-201 miRNA K562 (Cell line)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 1128.00 9.50 2.86 32.99 MIR106B-201 miRNA K562 (Cell line)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 3710.00 31.24 9.42 100.0 MIR106B-201 miRNA K562 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 229508.00 83.62 582.47 98.99 SNORD83A-201 snoRNA K562 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 32898.00 11.99 83.49 92.57 SNORD83A-201 snoRNA K562 (Cell line)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 652.00 69.44 1.65 100.0 SNORD41-201 snoRNA K562 (Cell line)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 330.00 0.92 0.84 100.0 MT-TF-201 Mt tRNA K562 (Cell line)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 2022.00 5.63 5.13 58.37 MT-TF-201 Mt tRNA K562 (Cell line)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 1748.00 4.87 4.44 42.09 MT-TF-201 Mt tRNA K562 (Cell line)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 2215.00 7.86 5.62 100.0 MT-TV-201 Mt tRNA K562 (Cell line)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 24760.00 11.44 62.84 100.0 MT-RNR2-201 Mt rRNA K562 (Cell line)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 59472.00 27.48 150.93 100.0 MT-RNR2-201 Mt rRNA K562 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 1529.00 0.71 3.88 81.94 MT-RNR2-201 Mt rRNA K562 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 36.00 0.02 0.09 100.0 MT-RNR2-201 Mt rRNA K562 (Cell line)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 3336.00 1.54 8.47 100.0 MT-RNR2-201 Mt rRNA K562 (Cell line)