ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385019.1 ENST00000385019.1_6_28_+ 6–28 17.00 2.08 0.04 100.0 MIR199A1-201 miRNA K562 (Cell line)
ENST00000385021.3 ENST00000385021.3_51_72_+ 51–72 17.00 73.91 0.04 100.0 MIR487B-201 miRNA K562 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_31_+ 11–31 16375.17 38.58 41.56 46.69 MIR93-201 miRNA K562 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_33_+ 11–33 23761.40 55.98 60.30 58.53 MIR93-201 miRNA K562 (Cell line)
ENST00000385025.1 ENST00000385025.1_20_41_+ 20–41 6208.00 68.87 15.76 78.21 MIR532-201 miRNA K562 (Cell line)
ENST00000385045.1 ENST00000385045.1_20_41_+ 20–41 1882.00 70.15 4.78 100.0 MIR15B-201 miRNA K562 (Cell line)
ENST00000385050.3 ENST00000385050.3_53_74_+ 53–74 172.00 52.12 0.44 100.0 MIR542-201 miRNA K562 (Cell line)
ENST00000385051.1 ENST00000385051.1_51_71_+ 51–71 282.00 4.18 0.72 100.0 MIR500A-201 miRNA K562 (Cell line)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 5273.00 78.18 13.38 100.0 MIR500A-201 miRNA K562 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_21_+ 6–21 1.00 0.17 0.00 100.0 MIR30A-201 miRNA K562 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_25_+ 6–25 7.00 1.16 0.02 87.5 MIR30A-201 miRNA K562 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_29_+ 6–29 88.00 14.62 0.22 98.88 MIR30A-201 miRNA K562 (Cell line)
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 475.00 78.90 1.21 100.0 MIR30A-201 miRNA K562 (Cell line)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 1076.00 1.00 2.73 100.0 MIR27B-201 miRNA K562 (Cell line)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 87967.00 82.09 223.25 84.69 MIR27B-201 miRNA K562 (Cell line)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 590.00 85.51 1.50 100.0 MIR196A2-201 miRNA K562 (Cell line)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 3377.00 82.51 8.57 100.0 MIR577-201 miRNA K562 (Cell line)
ENST00000385199.1 ENST00000385199.1_51_70_+ 51–70 524.00 86.33 1.33 92.09 MIR654-201 miRNA K562 (Cell line)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 36.00 100.00 0.09 100.0 MIR204-201 miRNA K562 (Cell line)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 163.00 73.09 0.41 100.0 MIR152-201 miRNA K562 (Cell line)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 3.00 100.00 0.01 100.0 MIR138-1-201 miRNA K562 (Cell line)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 11483.00 74.42 29.14 100.0 MIR30C1-201 miRNA K562 (Cell line)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 2728.00 79.12 6.92 100.0 MIR660-201 miRNA K562 (Cell line)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 8.00 72.73 0.02 100.0 MIR125B1-201 miRNA K562 (Cell line)
ENST00000385254.3 ENST00000385254.3_16_37_+ 16–37 38.00 28.79 0.10 100.0 MIR493-201 miRNA K562 (Cell line)