ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 2025.00 48.11 3.76 100.0 RPL5-205 retained intron K562 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 851.00 20.22 1.58 100.0 RPL5-205 retained intron K562 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 43.00 0.17 0.08 100.0 ZBED9-AS1-201 lncRNA K562 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 7999.00 74.37 14.87 100.0 RPS3A-206 retained intron K562 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 26764.00 94.35 49.75 100.0 COX7C-203 protein coding K562 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 283654.70 71.96 527.30 74.87 RACK1-229 protein coding K562 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 88832.80 22.54 165.14 23.08 RACK1-229 protein coding K562 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 598.00 0.15 1.11 62.62 RACK1-229 protein coding K562 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 13.00 0.00 0.02 100.0 RACK1-229 protein coding K562 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 72419.00 11.42 134.62 57.37 RACK1-230 retained intron K562 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 539885.00 85.17 1003.62 91.69 RACK1-230 retained intron K562 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 10546.00 15.83 19.60 100.0 RNA5SP486-201 rRNA pseudogene K562 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 878.00 83.22 1.63 100.0 SCARNA5-201 scaRNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 1662.00 1.07 3.09 100.0 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 596.00 0.38 1.11 100.0 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 40408.00 26.02 75.12 96.32 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 10061.00 6.48 18.70 97.56 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 31.00 0.02 0.06 100.0 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 3353.00 2.16 6.23 57.7 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 3398.00 2.19 6.32 72.98 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 689.00 0.44 1.28 100.0 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 8225.00 5.30 15.29 84.21 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 285.00 0.18 0.53 100.0 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 43972.00 28.31 81.74 100.0 RNY4-201 misc RNA K562 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 915.00 0.59 1.70 79.98 RNY4-201 misc RNA K562 (Cell line)