ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 70070.00 13.62 130.26 95.3 RPL13A-212 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 696.00 0.14 1.29 100.0 RPL13A-212 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1664.00 0.32 3.09 100.0 RPL13A-212 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 1082.00 0.21 2.01 100.0 RPL13A-212 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 201.00 0.04 0.37 18.93 RPL13A-212 retained intron K562 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 51641.00 64.86 96.00 76.1 RPL7A-207 protein coding CDS not defined K562 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 1119.00 1.41 2.08 100.0 RPL7A-207 protein coding CDS not defined K562 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 92.00 0.12 0.17 100.0 RPL7A-207 protein coding CDS not defined K562 (Cell line)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 2.00 0.00 0.00 100.0 RPL7A-207 protein coding CDS not defined K562 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 580.00 1.94 1.08 100.0 RN7SL2-201 misc RNA K562 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 18941.00 63.23 35.21 90.67 RN7SL2-201 misc RNA K562 (Cell line)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 2.00 3.08 0.00 100.0 RGS11-208 retained intron K562 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 114657.00 94.71 213.14 99.64 NOP56-217 protein coding CDS not defined K562 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 520.00 0.43 0.97 100.0 NOP56-217 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 9887.00 2.04 18.38 55.7 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 711.00 0.15 1.32 100.0 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2.00 0.00 0.00 100.0 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 60.00 0.01 0.11 21.2 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 3942.00 0.81 7.33 100.0 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1966.00 0.41 3.65 100.0 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 223.00 0.05 0.41 78.8 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 430234.00 88.86 799.78 99.07 RABGGTB-213 protein coding CDS not defined K562 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 442.00 3.05 0.82 100.0 GNL3-211 retained intron K562 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 12086.00 83.37 22.47 100.0 GNL3-211 retained intron K562 (Cell line)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 2.00 0.05 0.00 100.0 RPL5-205 retained intron K562 (Cell line)