ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 43.00 26.54 0.08 37.72 MIR3142HG-201 lncRNA K562 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 4746.00 59.33 8.82 100.0 SNHG6-204 retained intron K562 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 50124.00 56.64 93.18 87.86 MIR151A-201 miRNA K562 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 29577.00 33.42 54.98 100.0 MIR151A-201 miRNA K562 (Cell line)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 12997.00 95.20 24.16 100.0 DENND3-221 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 755.00 0.22 1.40 78.24 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 6.00 0.00 0.01 27.27 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 16.00 0.00 0.03 72.73 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 105.00 0.03 0.20 100.0 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 42.00 0.01 0.08 85.71 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 5.00 0.00 0.01 100.0 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 542.00 0.16 1.01 100.0 WDR74-204 protein coding K562 (Cell line)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 55.00 0.02 0.10 100.0 WDR74-204 protein coding K562 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 44481.00 83.74 82.69 100.0 HSPA8-211 retained intron K562 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 97.00 1.91 0.18 100.0 SCARNA9-201 lncRNA K562 (Cell line)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 9105.00 2.32 16.93 100.0 TAF1D-215 retained intron K562 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 366241.00 93.40 680.82 100.0 TAF1D-215 retained intron K562 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 9552.00 67.57 17.76 100.0 HSPA8-215 retained intron K562 (Cell line)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 529.00 3.74 0.98 100.0 HSPA8-215 retained intron K562 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 69.00 0.49 0.13 100.0 HSPA8-215 retained intron K562 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 2002.00 27.64 3.72 100.0 RPS2-215 retained intron K562 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 280330.00 86.31 521.12 87.2 ENST00000548801 lncRNA K562 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 2523.00 25.27 4.69 100.0 ENST00000554988 lncRNA K562 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 2193.00 21.97 4.08 100.0 ENST00000554988 lncRNA K562 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 34.00 0.34 0.06 100.0 ENST00000554988 lncRNA K562 (Cell line)