ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 2.00 9.09 0.00 100.0 SNHG14-207 lncRNA K562 (Cell line)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 640613.00 97.44 1190.87 99.41 SNORD105B-201 snoRNA K562 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 2628.00 69.97 4.89 98.21 SNORD121B-201 snoRNA K562 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 79.00 0.42 0.15 100.0 SNORD127-201 snoRNA K562 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 16720.00 88.11 31.08 99.64 SNORD127-201 snoRNA K562 (Cell line)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 33714.00 74.75 62.67 100.0 SNORD42B-201 snoRNA K562 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 7980.00 50.98 14.83 100.0 RNY4P25-201 misc RNA K562 (Cell line)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 416.00 42.49 0.77 100.0 SNORD121A-201 snoRNA K562 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 25895.00 64.77 48.14 81.29 SNORD126-201 snoRNA K562 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 11390.00 28.49 21.17 64.92 SNORD126-201 snoRNA K562 (Cell line)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 16202.00 82.86 30.12 87.63 SNORD124-201 snoRNA K562 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 270.00 5.25 0.50 100.0 SNHG12-201 retained intron K562 (Cell line)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 1735.00 12.46 3.23 100.0 RPL3-212 retained intron K562 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 7167.00 51.48 13.32 93.38 RPL3-212 retained intron K562 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 29493.00 97.41 54.83 100.0 SMC1A-204 retained intron K562 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 327656.00 94.65 609.10 99.45 RABGGTB-208 protein coding CDS not defined K562 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 246.00 8.41 0.46 86.01 DDX39B-219 retained intron K562 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 328.00 11.21 0.61 100.0 DDX39B-219 retained intron K562 (Cell line)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 476.00 16.27 0.88 100.0 DDX39B-219 retained intron K562 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 17715.00 78.68 32.93 100.0 RPS8-206 protein coding CDS not defined K562 (Cell line)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 81890.00 96.81 152.23 99.95 RPL13-207 retained intron K562 (Cell line)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 410.00 0.48 0.76 100.0 RPL13-207 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 3526.00 0.27 6.55 79.47 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1596.00 0.12 2.97 47.51 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 519.00 0.04 0.96 35.4 EIF4A2-219 retained intron K562 (Cell line)