ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 642.00 0.05 1.19 67.86 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 3054.00 0.23 5.68 86.42 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 3526.00 0.27 6.55 79.47 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 4430.00 0.33 8.24 100.0 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 646686.00 48.69 1202.16 97.37 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 30502.00 2.30 56.70 100.0 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2113.00 0.16 3.93 59.89 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 952.00 0.07 1.77 100.0 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1596.00 0.12 2.97 47.51 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 1043.00 0.08 1.94 62.61 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 519.00 0.04 0.96 35.4 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 595499.00 44.83 1107.00 84.58 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 94376.00 96.87 175.44 100.0 RPS8-207 protein coding CDS not defined K562 (Cell line)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 339.00 6.45 0.63 100.0 RPL7A-206 protein coding CDS not defined K562 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 1222.00 23.27 2.27 100.0 RPL7A-206 protein coding CDS not defined K562 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 1344.00 25.59 2.50 100.0 RPL7A-206 protein coding CDS not defined K562 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 509.00 0.10 0.95 100.0 RPL21-209 retained intron K562 (Cell line)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 244.00 0.05 0.45 100.0 RPL21-209 retained intron K562 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 280316.00 57.21 521.09 94.81 RPL21-209 retained intron K562 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 958.00 0.20 1.78 100.0 RPL21-209 retained intron K562 (Cell line)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 194932.00 39.78 362.37 99.45 RPL21-209 retained intron K562 (Cell line)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 4319.00 20.47 8.03 100.0 GABRE-209 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 415159.00 80.72 771.76 99.52 RPL13A-212 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 4.00 0.00 0.01 100.0 RPL13A-212 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 346.00 0.07 0.64 100.0 RPL13A-212 retained intron K562 (Cell line)