ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 2197.00 0.76 4.08 100.0 SNORD12B-201 snoRNA K562 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 254242.00 87.76 472.62 95.11 SNORD12B-201 snoRNA K562 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 9802.00 3.38 18.22 100.0 SNORD12B-201 snoRNA K562 (Cell line)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 113.00 3.67 0.21 100.0 Y_RNA.609-201 misc RNA K562 (Cell line)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 563.00 43.81 1.05 100.0 Y_RNA.612-201 misc RNA K562 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 20096.00 87.58 37.36 96.07 SNORD71-201 snoRNA K562 (Cell line)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 1386.00 6.04 2.58 100.0 SNORD71-201 snoRNA K562 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 77.00 0.34 0.14 100.0 SNORD71-201 snoRNA K562 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 37215.00 81.91 69.18 91.0 MIR194-2HG-201 lncRNA K562 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 7216.00 15.88 13.41 59.94 MIR194-2HG-201 lncRNA K562 (Cell line)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 2158.00 12.93 4.01 100.0 LINC01783-201 lncRNA K562 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 6062.00 99.46 11.27 100.0 RPS7P15-201 processed pseudogene K562 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 41.00 0.61 0.08 100.0 SNORD62B-201 snoRNA K562 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 25.00 0.37 0.05 100.0 SNORD62B-201 snoRNA K562 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 4550.00 67.73 8.46 95.97 SNORD62B-201 snoRNA K562 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 326.00 4.85 0.61 100.0 SNORD62B-201 snoRNA K562 (Cell line)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 700.00 10.42 1.30 100.0 SNORD62B-201 snoRNA K562 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 14030.00 97.17 26.08 100.0 MRPL32-203 nonsense mediated decay K562 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 2819.00 90.82 5.24 100.0 ENST00000436739 lncRNA K562 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 672.00 8.18 1.25 100.0 TMEM107-204 protein coding K562 (Cell line)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 525.00 6.39 0.98 32.57 TMEM107-204 protein coding K562 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 334.00 4.07 0.62 100.0 TMEM107-204 protein coding K562 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 4.00 0.05 0.01 7.41 TMEM107-204 protein coding K562 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 13100.00 56.31 24.35 100.0 SNHG16-201 lncRNA K562 (Cell line)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 5825.00 25.04 10.83 58.65 SNHG16-201 lncRNA K562 (Cell line)