ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 519.00 3.11 1.34 63.45 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 999.00 5.99 2.58 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 60.00 0.36 0.15 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 3328.00 19.97 8.58 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 2016.00 0.34 5.20 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 189.00 2.52 0.49 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 2463.00 13.33 6.35 92.07 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_13_+ 1–13 6428.00 34.78 16.58 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 212.00 1.15 0.55 7.93 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 10275.00 6.14 26.50 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 10297.00 6.16 26.55 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 156.00 2.85 0.40 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 52929.00 74.03 136.50 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 540.00 2.09 1.39 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 43053.00 8.48 111.03 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 4167.00 0.82 10.75 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 30260.00 5.96 78.04 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 6515.00 1.28 16.80 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 62.00 0.01 0.16 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 3783.00 0.74 9.76 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 585.00 0.10 1.51 59.15 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 1730.00 0.29 4.46 66.56 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 6711.00 1.14 17.31 97.29 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 1420.00 2.02 3.66 34.27 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 320.00 29.88 0.83 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA GM12878 (Cell line)