ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 167.00 0.37 0.43 13.31 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 1088.00 2.43 2.81 90.97 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 3490.00 4.78 9.00 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 11966.00 2.64 30.86 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 53167.00 11.72 137.11 64.83 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 70.00 0.21 0.18 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 10789.00 13.14 27.82 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 8484.00 1.67 21.88 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 24472.00 6.94 63.11 79.44 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 808.00 0.23 2.08 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 3377.00 0.96 8.71 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 5857.00 1.66 15.10 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 13497.00 3.83 34.81 65.17 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 6016.00 1.71 15.51 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 139677.00 41.27 360.21 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 23747.00 7.02 61.24 66.02 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 125501.00 38.96 323.65 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 39764.00 11.75 102.55 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 7238.00 2.14 18.67 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 311.00 0.09 0.80 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 100243.00 29.61 258.51 90.01 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 19993.00 5.91 51.56 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 58886.00 27.40 151.86 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 64071.00 21.45 165.23 59.19 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 15999.00 9.50 41.26 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA GM12878 (Cell line)