ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 379.00 0.26 0.98 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 28406.00 41.91 73.26 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 16521.00 5.32 42.61 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 43.00 0.38 0.11 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 447.00 3.95 1.15 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 4263.00 37.70 10.99 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 290.00 2.81 0.75 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA GM12878 (Cell line)