ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 243.00 4.59 0.63 75.0 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 66.00 40.49 0.17 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 178.00 0.06 0.46 14.24 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 1072.00 0.38 2.76 85.76 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 66567.00 23.43 171.67 75.11 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 2996.00 6.37 7.73 48.99 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 9041.32 19.22 23.32 77.55 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 3763.92 8.00 9.71 30.79 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 14940.00 46.88 38.53 93.74 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 25.00 0.04 0.06 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 12224.00 3.63 31.52 57.92 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 9367.00 6.47 24.16 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 11698.00 2.45 30.17 80.48 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 2164.00 15.66 5.58 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 8729.00 5.31 22.51 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 68665.00 37.46 177.08 94.24 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 462.00 0.73 1.19 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 3161.00 4.99 8.15 53.22 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 22.00 0.20 0.06 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 1038.00 4.36 2.68 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 45.00 0.10 0.12 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 14909.00 36.91 38.45 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 252.00 33.33 0.65 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 155880.00 30.78 401.99 97.27 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 8890.00 1.76 22.93 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA GM12878 (Cell line)