ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 45622.00 2.63 117.65 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 514414.68 29.71 1326.61 38.47 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 100665.00 5.81 259.60 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 1066.00 0.06 2.75 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 34220.00 1.98 88.25 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 61643.00 3.56 158.97 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 9440.00 0.31 24.34 87.72 SNHG32-223 lncRNA GM12878 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 165572.00 5.35 426.99 100.0 SNHG32-223 lncRNA GM12878 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 14919.00 0.48 38.47 100.0 SNHG32-223 lncRNA GM12878 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 2988.00 0.10 7.71 100.0 SNHG32-223 lncRNA GM12878 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 2862876.00 92.58 7382.97 100.0 SNHG32-223 lncRNA GM12878 (Cell line)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 54074.00 60.91 139.45 99.18 SNHG32-227 lncRNA GM12878 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 27815.00 31.33 71.73 100.0 SNHG32-227 lncRNA GM12878 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 211.00 0.24 0.54 100.0 SNHG32-227 lncRNA GM12878 (Cell line)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 546.00 0.62 1.41 100.0 SNHG32-227 lncRNA GM12878 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 38233.00 80.08 98.60 100.0 B4GALT1-203 nonsense mediated decay GM12878 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 267.00 0.56 0.69 100.0 ENST00000722183 lncRNA GM12878 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 30876.00 64.31 79.62 94.13 ENST00000722183 lncRNA GM12878 (Cell line)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 1104.00 2.30 2.85 100.0 ENST00000722183 lncRNA GM12878 (Cell line)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 562.00 85.93 1.45 100.0 MIR34BHG-202 lncRNA GM12878 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 4287.00 50.19 11.06 56.95 THBS3-AS1-228 lncRNA GM12878 (Cell line)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 2267.00 66.48 5.85 100.0 MIR200CHG-202 lncRNA GM12878 (Cell line)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 39.00 1.14 0.10 100.0 MIR200CHG-202 lncRNA GM12878 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 365.00 9.94 0.94 100.0 SNHG16-266 lncRNA GM12878 (Cell line)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 1473.00 40.11 3.80 100.0 SNHG16-266 lncRNA GM12878 (Cell line)