ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 74.00 0.02 0.19 100.0 LINC02739-203 lncRNA GM12878 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 31165.00 9.14 80.37 62.93 LINC02739-203 lncRNA GM12878 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 127016.00 37.24 327.56 100.0 LINC02739-203 lncRNA GM12878 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 9453.00 2.77 24.38 100.0 LINC02739-203 lncRNA GM12878 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 15888.00 4.66 40.97 100.0 LINC02739-203 lncRNA GM12878 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 18359.00 5.38 47.35 37.07 LINC02739-203 lncRNA GM12878 (Cell line)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 6.00 10.17 0.02 100.0 MIR124-1HG-216 lncRNA GM12878 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 551.00 26.39 1.42 100.0 SNHG10-212 lncRNA GM12878 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 1.86 0.00 0.00 46.62 SNHG19-202 lncRNA GM12878 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2.88 0.01 0.01 72.05 SNHG19-202 lncRNA GM12878 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 1149.25 2.81 2.96 7.03 SNHG19-202 lncRNA GM12878 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 30699.39 75.16 79.17 96.49 SNHG19-202 lncRNA GM12878 (Cell line)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 5176.00 37.02 13.35 100.0 MIR222HG-206 lncRNA GM12878 (Cell line)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 3181.00 22.75 8.20 50.63 MIR222HG-206 lncRNA GM12878 (Cell line)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 269.00 1.92 0.69 100.0 MIR222HG-206 lncRNA GM12878 (Cell line)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 1.00 16.67 0.00 100.0 MIR302CHG-205 lncRNA GM12878 (Cell line)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 114.00 18.91 0.29 100.0 RPSA-216 retained intron GM12878 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 2644.00 75.28 6.82 98.92 MIR99AHG-370 lncRNA GM12878 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 486.00 13.84 1.25 96.43 MIR99AHG-370 lncRNA GM12878 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 89640.00 98.18 231.17 100.0 HPS4-237 retained intron GM12878 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 6673.00 10.69 17.21 100.0 DNAJC5-203 nonsense mediated decay GM12878 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 15574.00 15.12 40.16 100.0 ENST00000707189 TEC GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 387.00 0.02 1.00 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 888436.64 51.31 2291.16 65.02 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 8723.00 0.50 22.50 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)