ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 354.00 9.64 0.91 100.0 SNHG16-266 lncRNA GM12878 (Cell line)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 12.00 0.33 0.03 100.0 SNHG16-266 lncRNA GM12878 (Cell line)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 3505.00 19.79 9.04 100.0 NR2F2-AS1-327 lncRNA GM12878 (Cell line)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 10847.00 5.92 27.97 41.81 ENST00000747675 lncRNA GM12878 (Cell line)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 66107.00 36.08 170.48 100.0 ENST00000747675 lncRNA GM12878 (Cell line)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 8272.00 4.52 21.33 43.27 ENST00000747675 lncRNA GM12878 (Cell line)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 6824.00 3.72 17.60 38.62 ENST00000747675 lncRNA GM12878 (Cell line)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 19556.00 10.67 50.43 100.0 ENST00000747675 lncRNA GM12878 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 42617.00 52.82 109.90 94.26 SNHG26-250 lncRNA GM12878 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 247.00 0.31 0.64 2.75 SNHG26-250 lncRNA GM12878 (Cell line)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 12305.00 16.43 31.73 100.0 LINC02422-207 lncRNA GM12878 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 16350.00 9.28 42.16 100.0 ENST00000753088 lncRNA GM12878 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 5133.00 2.91 13.24 100.0 ENST00000753088 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_130_+ 98–130 15715.95 8.77 40.53 80.67 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 6345.49 3.54 16.36 67.21 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_133_172_+ 133–172 44537.00 24.84 114.85 100.0 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_117_172_+ 117–172 8495.00 4.74 21.91 100.0 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_137_172_+ 137–172 4465.00 2.49 11.51 100.0 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_132_+ 98–132 4208.33 2.35 10.85 22.66 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_107_172_+ 107–172 2559.15 1.43 6.60 20.38 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_125_+ 98–125 2421.85 1.35 6.25 31.65 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_172_+ 98–172 14288.00 7.97 36.85 100.0 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756336.1 ENST00000756336.1_109_172_+ 109–172 17105.45 9.54 44.11 90.38 ENST00000756336 lncRNA GM12878 (Cell line)
ENST00000756452.1 ENST00000756452.1_116_129_+ 116–129 1132.00 85.56 2.92 100.0 ENST00000756452 lncRNA GM12878 (Cell line)
ENST00000760093.1 ENST00000760093.1_80_108_+ 80–108 363.00 1.03 0.94 100.0 ENST00000760093 lncRNA GM12878 (Cell line)