ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 210.00 0.03 0.54 65.62 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 281.00 0.04 0.72 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 30.00 0.00 0.08 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 146.00 0.02 0.38 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 59.00 7.75 0.15 100.0 SNHG14-315 lncRNA GM12878 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 51.00 6.70 0.13 98.08 SNHG14-315 lncRNA GM12878 (Cell line)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 53.00 6.96 0.14 92.98 SNHG14-315 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 224.00 0.20 0.58 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 13045.32 11.59 33.64 27.55 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 32.00 0.03 0.08 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 969.00 0.86 2.50 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 41545.07 36.91 107.14 76.4 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 3745.00 3.33 9.66 55.6 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 56.00 0.05 0.14 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 28928.00 25.70 74.60 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 105.00 0.09 0.27 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 1.00 0.00 0.00 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 4362.00 3.88 11.25 95.24 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 13.00 17.81 0.03 86.67 MEG8-251 lncRNA GM12878 (Cell line)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 1.00 1.37 0.00 100.0 MEG8-251 lncRNA GM12878 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 12.00 8.22 0.03 80.0 SNHG14-336 lncRNA GM12878 (Cell line)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 17.00 11.64 0.04 70.83 SNHG14-336 lncRNA GM12878 (Cell line)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 15.00 5.58 0.04 100.0 SNHG14-341 lncRNA GM12878 (Cell line)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 2.00 0.07 0.01 100.0 NCL-211 retained intron GM12878 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 33858.00 36.77 87.32 100.0 FMN2-209 protein coding CDS not defined GM12878 (Cell line)