ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 12958.00 10.88 33.42 100.0 LINC01962-202 lncRNA GM12878 (Cell line)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 35.00 3.21 0.09 100.0 SNHG14-241 lncRNA GM12878 (Cell line)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 6.00 60.00 0.02 100.0 MEG8-228 lncRNA GM12878 (Cell line)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 1.00 0.13 0.00 100.0 SNHG14-261 lncRNA GM12878 (Cell line)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 39.00 5.21 0.10 84.78 SNHG14-261 lncRNA GM12878 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 1752.00 0.79 4.52 100.0 LIMD1-AS1-204 lncRNA GM12878 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 5763.00 2.59 14.86 100.0 LIMD1-AS1-204 lncRNA GM12878 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 68649.00 30.83 177.04 88.93 LIMD1-AS1-204 lncRNA GM12878 (Cell line)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 804.00 11.21 2.07 93.06 MIR99AHG-262 lncRNA GM12878 (Cell line)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 5003.00 69.74 12.90 100.0 MIR99AHG-262 lncRNA GM12878 (Cell line)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 1.00 1.33 0.00 100.0 SNHG14-270 lncRNA GM12878 (Cell line)
ENST00000661688.1 ENST00000661688.1_965_986_+ 965–986 92.00 2.38 0.24 100.0 MIR9-2HG-225 lncRNA GM12878 (Cell line)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 3247.00 83.97 8.37 95.61 MIR9-2HG-225 lncRNA GM12878 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 3676.00 85.99 9.48 100.0 SNHG17-252 lncRNA GM12878 (Cell line)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 15.00 3.16 0.04 55.56 SNHG14-288 lncRNA GM12878 (Cell line)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 300.00 63.16 0.77 97.4 SNHG14-288 lncRNA GM12878 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 392.00 2.77 1.01 100.0 ENST00000666735 lncRNA GM12878 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 2812.00 19.86 7.25 100.0 ENST00000666735 lncRNA GM12878 (Cell line)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 1.96 0.97 0.01 16.33 SNHG14-312 lncRNA GM12878 (Cell line)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 11.15 5.52 0.03 92.91 SNHG14-312 lncRNA GM12878 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 4.00 18.18 0.01 100.0 MEG8-244 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 8239.00 1.06 21.25 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 7.00 0.00 0.02 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 36103.00 4.66 93.10 99.51 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 17.14 0.00 0.04 38.95 SNHG1-248 lncRNA GM12878 (Cell line)