ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 599.00 0.78 1.54 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 181.00 0.24 0.47 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 11432.00 14.93 29.48 90.14 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 398.00 0.52 1.03 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 1953.00 2.55 5.04 45.51 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 14596.00 3.47 37.64 100.0 MIRLET7A1HG-203 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 833421.00 92.06 2149.28 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 58.00 0.01 0.15 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 176.00 0.02 0.45 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 165.00 0.02 0.43 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 44215.00 4.88 114.02 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 2467.00 0.27 6.36 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 2.00 0.00 0.01 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 1.00 0.04 0.00 100.0 SNHG14-234 lncRNA GM12878 (Cell line)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 64.00 2.58 0.17 94.12 SNHG14-234 lncRNA GM12878 (Cell line)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 130.00 5.25 0.34 100.0 SNHG14-234 lncRNA GM12878 (Cell line)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 3.00 0.12 0.01 100.0 SNHG14-234 lncRNA GM12878 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 12.00 0.48 0.03 100.0 SNHG14-234 lncRNA GM12878 (Cell line)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 2.00 0.08 0.01 100.0 SNHG14-234 lncRNA GM12878 (Cell line)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 24186.00 31.85 62.37 50.69 ENST00000655317 lncRNA GM12878 (Cell line)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 3594.00 4.73 9.27 100.0 ENST00000655317 lncRNA GM12878 (Cell line)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 31904.00 42.01 82.28 56.11 ENST00000655317 lncRNA GM12878 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 112.00 0.15 0.29 100.0 ENST00000655317 lncRNA GM12878 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 7041.00 5.91 18.16 84.62 LINC01962-202 lncRNA GM12878 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 16086.00 13.50 41.48 100.0 LINC01962-202 lncRNA GM12878 (Cell line)