ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 665.00 0.09 1.71 93.79 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 41997.00 5.42 108.30 97.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 168.00 0.02 0.43 36.05 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 90377.00 11.66 233.07 99.83 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 15256.00 1.97 39.34 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 191175.00 24.67 493.01 95.82 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 9.00 0.00 0.02 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 7985.00 1.03 20.59 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 6266.00 0.81 16.16 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 242.00 0.03 0.62 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 13.00 0.00 0.03 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 90.00 0.01 0.23 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 119787.00 15.46 308.91 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 3226.00 0.42 8.32 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 469.00 0.06 1.21 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 178354.00 23.01 459.95 97.65 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 559.00 0.07 1.44 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 1106.00 0.14 2.85 90.43 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 877.00 0.11 2.26 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 43.00 0.01 0.11 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 1.00 0.00 0.00 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 6876.00 0.89 17.73 100.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1724.00 0.22 4.45 96.85 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 25.52 0.00 0.07 58.0 SNHG1-248 lncRNA GM12878 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 596.00 0.08 1.54 100.0 SNHG1-248 lncRNA GM12878 (Cell line)