ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 54982.00 9.20 141.79 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 425.00 0.07 1.10 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 134.00 0.02 0.35 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 8525.00 1.43 21.98 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 1557.00 0.26 4.02 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 4995.00 0.84 12.88 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 2006.00 0.34 5.17 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 12.00 0.00 0.03 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 721.00 4.88 1.86 100.0 FTX-219 lncRNA GM12878 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 9851.00 66.67 25.40 86.77 FTX-219 lncRNA GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 4094.00 0.84 10.56 51.86 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 39673.00 8.10 102.31 71.82 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 66230.00 13.52 170.80 64.19 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 3800.00 0.78 9.80 48.14 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 83002.00 16.95 214.05 82.11 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 144233.00 29.45 371.96 100.0 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 16352.00 3.34 42.17 100.0 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 33854.00 6.91 87.30 100.0 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 209.00 0.27 0.54 82.61 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 11711.00 15.30 30.20 97.74 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 176.00 0.23 0.45 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 1610.00 2.10 4.15 60.16 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 579.00 0.76 1.49 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 413.00 0.54 1.07 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 21613.00 28.23 55.74 100.0 ENST00000651540 lncRNA GM12878 (Cell line)