ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 11.00 0.62 0.03 100.0 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 2.00 0.11 0.01 33.33 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 35.00 1.96 0.09 48.61 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 202.00 11.31 0.52 88.21 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 45716.88 66.96 117.90 87.13 5S_rRNA.20-201 rRNA pseudogene GM12878 (Cell line)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 961.00 4.84 2.48 100.0 HSPA9-211 retained intron GM12878 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 10458.00 52.67 26.97 99.17 HSPA9-211 retained intron GM12878 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 114.00 86.36 0.29 100.0 DNM3OS-205 lncRNA GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 33.00 0.01 0.09 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 21388.00 3.58 55.16 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 10.00 0.00 0.03 50.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 39950.00 6.69 103.03 99.7 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 35850.00 6.00 92.45 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 361.00 0.06 0.93 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 90.00 0.02 0.23 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 33139.00 5.55 85.46 99.34 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 4410.00 0.74 11.37 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 89337.00 14.96 230.39 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 98579.00 16.50 254.22 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 910.00 0.15 2.35 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 110460.00 18.49 284.86 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 1130.00 0.19 2.91 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 463.00 0.08 1.19 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 583.00 0.10 1.50 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 4445.00 0.74 11.46 77.97 GAS5-230 retained intron GM12878 (Cell line)