ENCFF000JMQ

Library Details

Organism: Homo Sapiens
Biosample: placental epithelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVH
Description: Part of ENCODE experiment ENCSR000CVH. The libraries contained in this experiment come from placental epithelial primary whole cells, HPIEpC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 419211.00 64.05 18151.64 96.65 GAS5-230 retained intron placental epithelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1.00 0.00 0.04 100.0 GAS5-230 retained intron placental epithelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 1029.00 0.16 44.56 100.0 GAS5-230 retained intron placental epithelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 98422.00 15.04 4261.63 80.59 GAS5-230 retained intron placental epithelial cell (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 2.00 0.02 0.09 100.0 ENST00000651540 lncRNA placental epithelial cell (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 8863.00 76.10 383.76 100.0 ENST00000651540 lncRNA placental epithelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 128301.00 17.66 5555.37 97.29 SNHG29-232 lncRNA placental epithelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 556862.00 76.65 24111.86 96.21 SNHG29-232 lncRNA placental epithelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 806.00 0.11 34.90 100.0 SNHG29-232 lncRNA placental epithelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 1.00 0.00 0.04 100.0 SNHG29-232 lncRNA placental epithelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1172.00 0.16 50.75 100.0 SNHG29-232 lncRNA placental epithelial cell (Primary cell)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 3.00 0.52 0.13 100.0 ENST00000655317 lncRNA placental epithelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 6809.00 21.72 294.83 100.0 SNHG1-248 lncRNA placental epithelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 4337.00 13.84 187.79 100.0 SNHG1-248 lncRNA placental epithelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 8340.00 26.61 361.12 100.0 SNHG1-248 lncRNA placental epithelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 700.00 3.09 30.31 100.0 SNHG5-273 lncRNA placental epithelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 8124.00 35.88 351.77 83.73 SNHG5-273 lncRNA placental epithelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 8685.00 38.36 376.06 91.1 SNHG5-273 lncRNA placental epithelial cell (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 664.00 75.03 28.75 100.0 SNHG14-336 lncRNA placental epithelial cell (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 3804.00 68.53 164.71 100.0 NCL-216 retained intron placental epithelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 9356.31 54.13 405.12 83.6 SNHG19-202 lncRNA placental epithelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1731.30 10.02 74.96 23.28 SNHG19-202 lncRNA placental epithelial cell (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1799.00 41.11 77.90 100.0 SNHG8-214 lncRNA placental epithelial cell (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 2351.00 72.47 101.80 100.0 ENST00000722183 lncRNA placental epithelial cell (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 151.00 80.32 6.54 100.0 ENST00000747512 lncRNA placental epithelial cell (Primary cell)