ENCFF000JMQ

Library Details

Organism: Homo Sapiens
Biosample: placental epithelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVH
Description: Part of ENCODE experiment ENCSR000CVH. The libraries contained in this experiment come from placental epithelial primary whole cells, HPIEpC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 2.00 6.25 0.09 100.0 RNY4-201 misc RNA placental epithelial cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 6992.00 5.77 302.75 100.0 SNHG6-204 retained intron placental epithelial cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 106380.00 87.85 4606.20 100.0 SNHG6-204 retained intron placental epithelial cell (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 13.00 1.12 0.56 76.47 WDR74-204 protein coding placental epithelial cell (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 5315.00 59.14 230.14 74.22 HSPA8-211 retained intron placental epithelial cell (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 2986.00 87.28 129.29 100.0 RPS13-208 retained intron placental epithelial cell (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 8093.00 85.29 350.42 100.0 HSPA8-215 retained intron placental epithelial cell (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 3920.00 78.12 169.73 100.0 RPL4-214 retained intron placental epithelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 754.00 24.00 32.65 100.0 ENST00000570843 lncRNA placental epithelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 1684.00 53.60 72.92 100.0 ENST00000570843 lncRNA placental epithelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 5.19 0.09 0.22 86.48 C19orf48P-203 retained intron placental epithelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 4392.00 78.12 190.17 100.0 C19orf48P-203 retained intron placental epithelial cell (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 200.00 20.99 8.66 100.0 RPS11-206 retained intron placental epithelial cell (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 5.00 0.67 0.22 100.0 ENST00000602478 lncRNA placental epithelial cell (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 209.00 26.56 9.05 100.0 NOP56-219 retained intron placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 42.82 0.52 1.85 35.98 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 1.00 0.01 0.04 33.33 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 3449.00 41.83 149.34 100.0 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 15.00 0.18 0.65 75.0 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 74.49 0.90 3.23 62.6 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 2.61 0.03 0.11 11.34 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 12.42 0.15 0.54 65.37 U2.3-201 snRNA placental epithelial cell (Primary cell)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 2.00 0.15 0.09 100.0 U2.6-201 snRNA placental epithelial cell (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 64.00 6.82 2.77 100.0 SNHG14-224 lncRNA placental epithelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 664.00 0.10 28.75 100.0 GAS5-230 retained intron placental epithelial cell (Primary cell)