ENCFF000JMQ

Library Details

Organism: Homo Sapiens
Biosample: placental epithelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVH
Description: Part of ENCODE experiment ENCSR000CVH. The libraries contained in this experiment come from placental epithelial primary whole cells, HPIEpC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 116.00 11.10 5.02 74.36 RNU5A-1-201 snRNA placental epithelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 272.57 26.08 11.80 56.55 RNU5A-1-201 snRNA placental epithelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 145.49 13.92 6.30 36.56 RNU5A-1-201 snRNA placental epithelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 11.00 0.65 0.48 100.0 7SK.1-201 misc RNA placental epithelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 612.00 35.89 26.50 100.0 7SK.1-201 misc RNA placental epithelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 7.00 0.40 0.30 100.0 SNORD83A-201 snoRNA placental epithelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 1.00 0.06 0.04 100.0 SNORD83A-201 snoRNA placental epithelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 5669.00 56.95 245.47 100.0 SNORD12B-201 snoRNA placental epithelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 2177.00 21.87 94.26 100.0 SNORD12B-201 snoRNA placental epithelial cell (Primary cell)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 2.00 0.37 0.09 100.0 TMEM107-204 protein coding placental epithelial cell (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 17910.00 90.00 775.49 100.0 SNHG3-202 retained intron placental epithelial cell (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 2663.00 71.17 115.31 100.0 SNORD124-201 snoRNA placental epithelial cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 12.00 0.21 0.52 100.0 RPL3-212 retained intron placental epithelial cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2528.00 43.77 109.46 54.23 RPL3-212 retained intron placental epithelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 1.00 0.01 0.04 100.0 RPL13A-212 retained intron placental epithelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 11635.00 73.30 503.79 100.0 RPL13A-212 retained intron placental epithelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 402.00 2.53 17.41 100.0 RPL13A-212 retained intron placental epithelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 6065.00 36.88 262.61 100.0 RPL7A-207 protein coding CDS not defined placental epithelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 7392.00 44.96 320.07 100.0 RPL7A-207 protein coding CDS not defined placental epithelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 5006.00 31.08 216.76 100.0 RABGGTB-213 protein coding CDS not defined placental epithelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 3288.00 20.41 142.37 100.0 RABGGTB-213 protein coding CDS not defined placental epithelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 8.00 0.05 0.35 88.89 RABGGTB-213 protein coding CDS not defined placental epithelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 45.00 0.01 1.95 100.0 RPL5-205 retained intron placental epithelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 415586.00 98.73 17994.68 99.57 RPL5-205 retained intron placental epithelial cell (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 23.00 4.20 1.00 100.0 RACK1-230 retained intron placental epithelial cell (Primary cell)