ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 4056.00 0.23 2.46 100.0 ZFAS1-238 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 2856.00 0.85 1.73 100.0 ZFAS1-242 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 326793.00 97.29 198.27 100.0 ZFAS1-242 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 105.00 38.60 0.06 100.0 ENST00000837997 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 78.00 28.68 0.05 100.0 ENST00000837997 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 703.00 62.38 0.43 73.38 ENST00000839036 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 841.00 44.24 0.51 100.0 ENST00000849527 lncRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 701.00 1.08 0.43 92.97 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 54059.00 83.19 32.80 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 8387.00 21.45 5.09 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 27.00 4.05 0.02 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 355.00 53.22 0.22 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 10138.00 61.29 6.15 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 7620.00 41.13 4.62 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 200.00 24.42 0.12 73.26 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 623.00 1.59 0.38 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 2324.00 5.28 1.41 86.72 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 22.00 0.05 0.01 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 21027.00 47.81 12.76 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 1227.00 13.06 0.74 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 7877.00 14.08 4.78 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 6723.00 12.02 4.08 84.34 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 26.00 0.05 0.02 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 655.00 1.17 0.40 86.99 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 2821.00 5.04 1.71 45.63 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA neural progenitor cell (In vitro differentiated cells)