ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 945.00 71.92 0.57 98.23 MIR181A1HG-212 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 4.00 0.30 0.00 100.0 MIR181A1HG-212 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 7404.00 41.21 4.49 100.0 C19orf48P-218 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 8360.00 46.53 5.07 100.0 C19orf48P-218 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000815283.1 ENST00000815283.1_298_361_+ 298–361 5307.00 60.83 3.22 75.23 SNHG18-220 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 205.00 15.59 0.12 100.0 ENST00000817026 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 804.68 1.98 0.49 44.88 ENST00000823279 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 1151.37 2.84 0.70 56.61 ENST00000823279 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 1366.00 3.37 0.83 100.0 ENST00000823279 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 12891.00 31.76 7.82 99.37 ENST00000823279 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 2306.71 5.68 1.40 57.35 ENST00000823279 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 1816.68 4.48 1.10 40.65 ENST00000823279 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 1043.00 2.57 0.63 82.39 ENST00000823279 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 485.00 1.19 0.29 25.54 ENST00000823279 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 188.00 0.46 0.11 100.0 ENST00000823279 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 2002.99 4.94 1.22 73.0 ENST00000823801 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 31789.00 7.90 19.29 100.0 GAS5-377 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 108.00 0.03 0.07 100.0 GAS5-377 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 619.00 0.15 0.38 100.0 GAS5-377 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 363546.00 90.35 220.57 100.0 GAS5-377 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 15.00 83.33 0.01 100.0 MIR205HG-245 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 139.00 6.89 0.08 100.0 TAF12-DT-204 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 1734491.00 97.55 1052.33 99.89 ZFAS1-238 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 363.00 0.02 0.22 100.0 ZFAS1-238 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 554.00 0.03 0.34 100.0 ZFAS1-238 lncRNA neural progenitor cell (In vitro differentiated cells)