ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 91.00 0.05 0.06 84.26 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 9939.76 5.03 6.03 71.53 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 3958.00 2.00 2.40 100.0 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 722.00 0.37 0.44 100.0 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 4.00 0.00 0.00 100.0 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 2613.00 1.32 1.59 100.0 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 733.64 0.37 0.45 57.14 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 509.24 0.26 0.31 48.13 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 461.00 0.29 0.28 100.0 U2.6-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 3.00 5.26 0.00 100.0 ENST00000619323 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 506.00 32.84 0.31 100.0 SCARNA4-202 scaRNA neural progenitor cell (In vitro differentiated cells)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 775.00 18.98 0.47 100.0 ENST00000625572 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 5809.00 86.12 3.52 100.0 ENST00000628177 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 78627.00 96.88 47.70 100.0 ENST00000630615 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 255.00 44.12 0.15 100.0 DMRT2-209 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 216.00 37.37 0.13 100.0 DMRT2-209 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 172.00 6.72 0.10 100.0 SNORD98-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 1511.00 59.02 0.92 100.0 SNORD98-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 165961.16 57.16 100.69 59.66 MIR106AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 257.92 0.09 0.16 60.26 MIR106AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 638.00 0.22 0.39 100.0 MIR106AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 163.58 0.06 0.10 38.22 MIR106AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 12.00 7.50 0.01 100.0 MEG8-222 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 75.00 46.88 0.05 100.0 MEG8-222 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 87915.00 8.63 53.34 97.49 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)