ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 2.00 100.00 0.00 100.0 MIR376C-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 111.00 53.88 0.07 100.0 SNHG21-206 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 6314.00 90.56 3.83 100.0 SNORD11B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 11926.00 83.14 7.24 100.0 SNORD91B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 5.00 25.00 0.00 100.0 MIR219A2HG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 26932.00 82.74 16.34 90.98 SNORD91A-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 4227.00 45.57 2.56 95.94 MIR486-1-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 36228.00 15.08 21.98 27.73 NOP56-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 3961.00 1.65 2.40 100.0 NOP56-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 474.00 0.20 0.29 100.0 NOP56-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 79063.00 32.92 47.97 99.03 NOP56-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 2330.00 16.07 1.41 80.96 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 508.94 3.51 0.31 59.87 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 33.00 0.23 0.02 100.0 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 1954.00 13.47 1.19 100.0 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 16.00 0.11 0.01 100.0 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 921.00 6.35 0.56 28.33 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 310.07 2.14 0.19 36.48 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 117.00 90.00 0.07 100.0 MIR7974-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 3289.00 1.66 2.00 100.0 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 5053.48 2.56 3.07 36.37 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 93069.00 47.06 56.47 99.83 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 32.00 0.02 0.02 100.0 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 1339.00 0.68 0.81 79.42 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 67.00 0.03 0.04 27.8 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)