ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 428823.00 42.11 260.17 98.16 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 130182.00 12.78 78.98 100.0 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 229016.00 22.49 138.95 97.76 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 522.00 0.05 0.32 100.0 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 4449.00 0.44 2.70 28.8 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 37953.00 3.73 23.03 77.1 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 28019.00 2.75 17.00 56.63 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 4713.90 18.87 2.86 71.75 5S_rRNA.20-201 rRNA pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 5197.00 17.79 3.15 100.0 HSPA9-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 16479.00 56.42 10.00 91.13 HSPA9-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 2.00 33.33 0.00 100.0 DNM3OS-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 280.00 0.01 0.17 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 7225.00 0.22 4.38 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 1558.00 0.05 0.95 22.67 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 60863.00 1.88 36.93 99.29 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 177.00 0.01 0.11 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 77.00 0.00 0.05 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 5656.00 0.17 3.43 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 2036922.00 62.78 1235.81 99.58 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 743.00 0.02 0.45 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 16318.00 0.50 9.90 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 12487.00 0.38 7.58 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1749.00 0.05 1.06 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 22299.00 0.69 13.53 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 51.00 0.00 0.03 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)