ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 670.00 0.01 0.75 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1315.00 0.02 1.47 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 200442.00 2.84 223.83 72.42 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 147.00 0.00 0.16 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 1196708.00 16.96 1336.36 97.78 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 423.00 0.01 0.47 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 160.00 0.00 0.18 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 18.00 0.00 0.02 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 211596.00 3.00 236.29 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1988.00 0.03 2.22 69.78 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 2275.15 0.03 2.54 49.64 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 607.00 0.01 0.68 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 2117.00 0.03 2.36 56.44 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 954.00 0.01 1.07 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 1255.00 0.02 1.40 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 5990.00 0.08 6.69 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 267799.00 32.35 299.05 100.0 SNHG14-315 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 270512.00 32.68 302.08 95.25 SNHG14-315 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 233745.00 28.24 261.02 92.24 SNHG14-315 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 3605.00 0.21 4.03 100.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 803575.01 46.82 897.35 51.99 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 285.00 0.02 0.32 100.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 706.00 0.04 0.79 100.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 827828.18 48.24 924.43 50.4 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 23917.00 1.39 26.71 92.67 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)