ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 136.00 4.66 0.15 100.0 ENST00000666735 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 544.00 83.05 0.61 100.0 MEG8-242 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 11056.74 20.20 12.35 23.15 SNHG14-312 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 36777.36 67.18 41.07 76.99 SNHG14-312 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 217.00 0.40 0.24 100.0 SNHG14-312 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 2.00 0.01 0.00 100.0 MEG8-244 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 13.00 0.07 0.01 100.0 MEG8-244 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 18899.00 99.08 21.10 99.67 MEG8-244 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 1837.00 0.03 2.05 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 126.00 0.00 0.14 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 8713.00 0.12 9.73 98.19 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 2197.11 0.03 2.45 47.94 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 3356.00 0.05 3.75 83.54 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 3341178.00 47.35 3731.09 99.27 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 582.00 0.01 0.65 66.82 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 90320.00 1.28 100.86 99.44 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 6263.00 0.09 6.99 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 1575053.00 22.32 1758.86 99.91 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 3008.00 0.04 3.36 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 356.00 0.01 0.40 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1044.00 0.01 1.17 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 5232.00 0.07 5.84 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 1621.00 0.02 1.81 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 689.00 0.01 0.77 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 79666.00 1.13 88.96 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)