ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 100.00 0.01 0.11 100.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 3880.00 0.23 4.33 100.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 2109.00 0.12 2.36 100.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 6.00 0.00 0.01 75.0 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 14429.00 0.84 16.11 93.01 SNHG5-273 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 4433.00 12.32 4.95 59.68 SNHG14-323 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 49.00 0.16 0.05 50.0 MEG8-251 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 28395.00 92.72 31.71 98.95 MEG8-251 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 67.00 0.22 0.07 62.62 MEG8-251 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 1184.00 3.87 1.32 86.74 MEG8-251 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 2.00 0.01 0.00 100.0 MEG8-251 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 162507.00 82.02 181.47 95.27 SNHG14-336 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 30015.00 15.15 33.52 31.29 SNHG14-336 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 81886.00 89.83 91.44 98.0 SNHG14-341 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 898.00 30.47 1.00 100.0 NCL-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 2.00 0.17 0.00 100.0 NCL-216 retained intron hepatocyte (In vitro differentiated cells)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 249.00 32.46 0.28 100.0 FMN2-209 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 51.00 1.58 0.06 100.0 LINC02739-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 209.00 6.49 0.23 69.67 LINC02739-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 189.00 5.87 0.21 100.0 LINC02739-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 378.00 11.74 0.42 100.0 LINC02739-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 595.00 18.48 0.66 100.0 LINC02739-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 91.00 2.83 0.10 30.33 LINC02739-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 2.00 22.22 0.00 100.0 MIR124-1HG-216 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 449.00 19.22 0.50 100.0 SNHG10-212 lncRNA hepatocyte (In vitro differentiated cells)