ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 5249.00 30.07 5.86 100.0 ENST00000554988 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 467.00 0.51 0.52 100.0 SNHG14-220 retained intron hepatocyte (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 39844.00 43.21 44.49 100.0 SNHG14-220 retained intron hepatocyte (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 48129.00 52.19 53.75 100.0 SNHG14-220 retained intron hepatocyte (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 746.00 0.81 0.83 100.0 SNHG14-220 retained intron hepatocyte (In vitro differentiated cells)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1179.00 99.66 1.32 100.0 TEKT4P2-201 transcribed unprocessed pseudogene hepatocyte (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1738.00 0.78 1.94 100.0 RPL4-202 retained intron hepatocyte (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 2729.00 1.23 3.05 100.0 RPL4-202 retained intron hepatocyte (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 209199.00 93.95 233.61 98.36 RPL4-202 retained intron hepatocyte (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 673.00 0.30 0.75 100.0 RPL4-202 retained intron hepatocyte (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 59.00 0.03 0.07 100.0 RPL4-202 retained intron hepatocyte (In vitro differentiated cells)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 48.00 0.12 0.05 100.0 ENST00000563103 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 405.00 1.18 0.45 100.0 RPL4-207 retained intron hepatocyte (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 30221.00 88.36 33.75 100.0 RPL4-207 retained intron hepatocyte (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 34124.00 69.44 38.11 93.95 ENST00000565336 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 8542.00 17.38 9.54 75.25 ENST00000565336 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 458407.00 84.22 511.90 85.87 RBMX-210 retained intron hepatocyte (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 1286.00 0.24 1.44 100.0 RBMX-210 retained intron hepatocyte (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 892.00 0.16 1.00 100.0 RBMX-210 retained intron hepatocyte (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 2070.00 0.38 2.31 100.0 RBMX-210 retained intron hepatocyte (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 5681.00 52.82 6.34 100.0 RPL4-214 retained intron hepatocyte (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 2567.00 23.87 2.87 100.0 RPL4-214 retained intron hepatocyte (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 191.00 0.71 0.21 100.0 POLG-DT-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 10011.26 37.10 11.18 70.12 POLG-DT-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 5803.53 21.51 6.48 38.27 POLG-DT-202 lncRNA hepatocyte (In vitro differentiated cells)