ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 189.00 0.17 0.21 100.0 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 1469.00 78.89 1.64 86.46 MIR3142HG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 17298.00 90.18 19.32 100.0 SNHG6-204 retained intron hepatocyte (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 15065.00 28.26 16.82 100.0 MIR151A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 32039.00 60.09 35.78 86.28 MIR151A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 6468.00 85.67 7.22 100.0 DENND3-221 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 429.00 0.09 0.48 80.79 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 119.00 0.03 0.13 100.0 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 203.00 0.04 0.23 54.57 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1993.00 0.43 2.23 70.62 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 169.00 0.04 0.19 45.43 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 625.00 0.14 0.70 100.0 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 352.00 0.08 0.39 100.0 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 376.00 0.08 0.42 100.0 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 35151.00 85.89 39.25 100.0 HSPA8-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 675.00 23.91 0.75 100.0 SCARNA9-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 323282.00 97.66 361.01 100.0 TAF1D-215 retained intron hepatocyte (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 1364.00 0.41 1.52 100.0 TAF1D-215 retained intron hepatocyte (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 85.00 0.26 0.09 100.0 HSPA8-215 retained intron hepatocyte (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 28169.00 85.84 31.46 100.0 HSPA8-215 retained intron hepatocyte (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 158.00 0.48 0.18 100.0 HSPA8-215 retained intron hepatocyte (In vitro differentiated cells)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1372.00 39.49 1.53 100.0 RPS2-215 retained intron hepatocyte (In vitro differentiated cells)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 180477.00 80.13 201.54 80.84 ENST00000548801 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 4139.00 23.71 4.62 100.0 ENST00000554988 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 75.00 0.43 0.08 100.0 ENST00000554988 lncRNA hepatocyte (In vitro differentiated cells)