ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 811.00 47.32 0.91 100.0 ENST00000570843 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 6.00 35.29 0.01 100.0 MIR497HG-207 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 73881.00 97.73 82.50 98.54 MIR22HG-212 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 403.00 0.32 0.45 53.59 SNORD53B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 117539.00 92.71 131.26 94.11 SNORD53B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 349.00 0.28 0.39 46.41 SNORD53B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 114.00 83.82 0.13 100.0 ENST00000578036 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 6976.00 92.53 7.79 100.0 RPL23A-207 protein coding hepatocyte (In vitro differentiated cells)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 1834.00 94.10 2.05 100.0 MIR744-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 54.00 76.06 0.06 100.0 MIR378C-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 8.00 15.69 0.01 19.05 MIR142HG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 1359.00 7.34 1.52 100.0 SNORD3C-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 3424.40 0.21 3.82 59.42 RPL23A-208 retained intron hepatocyte (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 2416.46 0.15 2.70 52.95 RPL23A-208 retained intron hepatocyte (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 1271869.00 76.98 1420.29 88.87 RPL23A-208 retained intron hepatocyte (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 366411.00 22.18 409.17 91.88 RPL23A-208 retained intron hepatocyte (In vitro differentiated cells)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 7.00 6.14 0.01 100.0 MIR133A1HG-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 27859.00 7.14 31.11 55.66 RPL17-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 49796.00 12.75 55.61 49.21 RPL17-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1761.00 0.45 1.97 100.0 RPL17-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 196998.00 50.46 219.99 94.23 RPL17-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 104619.00 26.80 116.83 95.41 RPL17-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 2.00 18.18 0.00 100.0 ENST00000582320 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 4.00 36.36 0.00 100.0 ENST00000582320 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 24381.00 19.15 27.23 100.0 RPL17-214 retained intron hepatocyte (In vitro differentiated cells)