ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 643.00 4.15 0.72 77.01 TMEM107-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 3997.00 25.79 4.46 76.66 TMEM107-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 18510.00 74.72 20.67 92.59 SNHG16-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 4091.00 16.51 4.57 100.0 SNHG16-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 16.00 0.78 0.02 100.0 SNHG14-207 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 204785.00 91.56 228.68 96.06 SNORD105B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 3188.00 49.33 3.56 62.1 SNORD121B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 194.00 0.14 0.22 100.0 SNORD127-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 139248.00 97.45 155.50 99.42 SNORD127-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 68302.00 95.86 76.27 100.0 SNORD42B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 286.00 9.60 0.32 100.0 RNY4P25-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 4369.00 73.86 4.88 100.0 SNORD121A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 13442.00 84.49 15.01 94.42 SNORD126-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 2002.00 12.58 2.24 55.6 SNORD126-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 40622.00 96.84 45.36 98.52 SNORD124-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 186.00 6.13 0.21 100.0 SNHG12-201 retained intron hepatocyte (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 9348.00 37.25 10.44 100.0 RPL3-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 7776.00 30.99 8.68 84.61 RPL3-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 15047.00 97.76 16.80 100.0 SMC1A-204 retained intron hepatocyte (In vitro differentiated cells)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 249950.00 92.60 279.12 98.37 RABGGTB-208 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 13678.00 63.91 15.27 86.81 DDX39B-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 696.00 3.25 0.78 100.0 DDX39B-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1105.00 5.16 1.23 100.0 DDX39B-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 5468.00 82.76 6.11 100.0 RPS8-206 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 4435.00 0.33 4.95 100.0 RPL13-207 retained intron hepatocyte (In vitro differentiated cells)