ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 901.00 22.84 1.01 100.0 RNU2-36P-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 867.00 0.44 0.97 100.0 SNORD19C-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 190906.00 97.42 213.18 99.02 SNORD19C-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 9823.00 2.41 10.97 100.0 SNORD12B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 909.00 0.22 1.02 100.0 SNORD12B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 383648.00 94.02 428.42 98.34 SNORD12B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 11.00 3.20 0.01 100.0 Y_RNA.609-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 39.00 24.84 0.04 100.0 Y_RNA.612-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 5909.00 1.25 6.60 100.0 SNORD71-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 300.00 0.06 0.34 100.0 SNORD71-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 460958.00 97.60 514.75 99.38 SNORD71-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 79320.00 18.45 88.58 64.58 MIR194-2HG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 330877.00 76.98 369.49 93.08 MIR194-2HG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 535.00 13.75 0.60 100.0 LINC01783-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 68.00 90.67 0.08 100.0 RPS7P15-201 processed pseudogene hepatocyte (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 3144.00 28.34 3.51 94.5 SNORD62B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 4161.00 37.51 4.65 100.0 SNORD62B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 214.00 1.93 0.24 100.0 SNORD62B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 806.00 7.27 0.90 100.0 SNORD62B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 78.00 0.70 0.09 100.0 SNORD62B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 137.00 95.14 0.15 100.0 MRPL32-203 nonsense mediated decay hepatocyte (In vitro differentiated cells)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 30.00 78.95 0.03 100.0 ENST00000436739 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 85.00 0.55 0.09 100.0 TMEM107-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 129.00 0.83 0.14 100.0 TMEM107-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 643.00 4.15 0.72 77.01 TMEM107-204 protein coding hepatocyte (In vitro differentiated cells)