ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 4435.00 0.33 4.95 100.0 RPL13-207 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2740.00 0.20 3.06 52.14 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 15116.00 1.09 16.88 81.48 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 971.00 0.07 1.08 36.33 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 2759.00 0.20 3.08 75.36 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 3193.00 0.23 3.57 100.0 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 4866.00 0.35 5.43 77.71 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 359.00 0.03 0.40 44.71 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 7430.00 0.54 8.30 88.75 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 195049.00 14.09 217.81 79.99 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 857.00 0.06 0.96 100.0 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 1118796.00 80.80 1249.36 99.21 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 5191.00 0.37 5.80 100.0 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1136.00 0.08 1.27 54.77 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 22.00 0.00 0.02 100.0 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 821.00 0.06 0.92 100.0 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 96751.00 97.62 108.04 100.0 RPS8-207 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 239.00 5.03 0.27 100.0 RPL7A-206 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 882.00 18.55 0.98 100.0 RPL7A-206 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 1961.00 41.25 2.19 100.0 RPL7A-206 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 1076593.00 82.36 1202.23 98.68 RPL21-209 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 81.00 0.01 0.09 100.0 RPL21-209 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 4200.00 0.32 4.69 100.0 RPL21-209 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 1741.00 0.13 1.94 100.0 RPL21-209 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 217323.00 16.62 242.68 99.16 RPL21-209 retained intron hepatocyte (In vitro differentiated cells)