ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 69.00 18.02 0.91 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 236.00 3.84 3.11 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 2143.00 34.89 28.26 78.04 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 33.00 25.00 0.44 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 6.00 4.17 0.08 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 23.00 0.62 0.30 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 43.00 2.92 0.57 39.81 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 89.00 6.05 1.17 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 3.00 0.20 0.04 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 5.00 0.34 0.07 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 158.00 10.73 2.08 87.78 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 166.00 11.28 2.19 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 272.00 26.28 3.59 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 169.00 16.33 2.23 58.89 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 121.00 14.14 1.60 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 1715.00 69.66 22.62 95.49 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 1.00 0.04 0.01 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 21.00 0.85 0.28 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 264.00 10.72 3.48 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 81.00 10.40 1.07 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 511.00 50.85 6.74 92.24 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 16.00 2.42 0.21 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 22.00 29.73 0.29 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 14.00 18.92 0.18 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 1.00 1.35 0.01 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA HT-29 (Cell line)