ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 6.00 3.92 0.08 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 14.00 15.91 0.18 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 14.00 4.26 0.18 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 45.00 42.45 0.59 88.24 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 78.00 0.68 1.03 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 111.00 15.48 1.46 92.5 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 6.00 0.84 0.08 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 2.00 0.28 0.03 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 153.00 64.02 2.02 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 278.00 4.51 3.67 34.84 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 98.00 1.59 1.29 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 1105.00 17.93 14.57 90.43 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 6.00 0.10 0.08 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 95.00 1.54 1.25 73.64 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_72_+ 1–72 2.00 0.03 0.03 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 17.00 0.28 0.22 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 4349.00 37.40 57.36 94.67 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 21.00 27.27 0.28 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 2.00 2.60 0.03 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 162.00 51.27 2.14 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 24.00 3.08 0.32 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 235.00 2.02 3.10 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 592.00 5.09 7.81 28.02 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 26.00 7.78 0.34 81.25 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 13.00 3.89 0.17 33.33 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA HT-29 (Cell line)