ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 30.00 0.40 0.40 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 19.00 26.76 0.25 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 16.00 10.60 0.21 55.17 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_13_+ 1–13 11.00 7.28 0.15 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 13.00 8.61 0.17 44.83 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 76.00 14.05 1.00 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 24.00 4.44 0.32 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 6.00 13.95 0.08 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 128.00 79.50 1.69 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 6.00 9.23 0.08 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 44.00 1.18 0.58 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 35.00 0.94 0.46 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 53.00 1.42 0.70 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 69.00 1.85 0.91 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 7.00 0.19 0.09 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 12.00 0.32 0.16 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 636.00 8.38 8.39 96.8 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 6.00 0.08 0.08 85.71 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 1.00 0.01 0.01 100.0 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 255.00 35.56 3.36 66.75 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 14.00 100.00 0.18 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 16.00 76.19 0.21 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 18.00 0.95 0.24 46.15 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 21.00 1.11 0.28 53.85 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 929.00 49.28 12.25 81.35 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA HT-29 (Cell line)