ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 295.00 0.27 3.89 70.57 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 16.00 0.01 0.21 100.0 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 389.00 0.36 5.13 100.0 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 138.00 0.13 1.82 100.0 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 1.00 0.92 0.01 100.0 NCL-211 retained intron HT-29 (Cell line)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1.00 0.95 0.01 100.0 NCL-216 retained intron HT-29 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 23.00 43.40 0.30 100.0 FMN2-209 protein coding CDS not defined HT-29 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 142.00 21.01 1.87 100.0 LINC02739-203 lncRNA HT-29 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 11.00 1.63 0.15 45.83 LINC02739-203 lncRNA HT-29 (Cell line)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 1.00 0.15 0.01 100.0 LINC02739-203 lncRNA HT-29 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 13.00 1.92 0.17 54.17 LINC02739-203 lncRNA HT-29 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 84.00 12.43 1.11 100.0 LINC02739-203 lncRNA HT-29 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 59.00 8.73 0.78 100.0 LINC02739-203 lncRNA HT-29 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 6.00 10.53 0.08 100.0 SNHG10-212 lncRNA HT-29 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 4928.04 13.24 64.99 28.01 SNHG19-202 lncRNA HT-29 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 0.72 0.00 0.01 72.05 SNHG19-202 lncRNA HT-29 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 31120.16 83.62 410.43 86.59 SNHG19-202 lncRNA HT-29 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 0.93 0.00 0.01 46.62 SNHG19-202 lncRNA HT-29 (Cell line)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 1853.00 64.70 24.44 100.0 MIR222HG-206 lncRNA HT-29 (Cell line)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 667.00 23.29 8.80 86.74 MIR222HG-206 lncRNA HT-29 (Cell line)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 64.00 2.23 0.84 100.0 MIR222HG-206 lncRNA HT-29 (Cell line)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 3.00 3.80 0.04 100.0 RPSA-216 retained intron HT-29 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 8.00 61.54 0.11 100.0 MIR99AHG-370 lncRNA HT-29 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 4.00 30.77 0.05 100.0 MIR99AHG-370 lncRNA HT-29 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 229.00 97.45 3.02 100.0 HPS4-237 retained intron HT-29 (Cell line)