ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 329.00 12.94 4.34 100.0 DNAJC5-203 nonsense mediated decay HT-29 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 49.00 15.51 0.65 100.0 ENST00000707189 TEC HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 44.00 0.70 0.58 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 54.00 0.86 0.71 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 161.00 2.55 2.12 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 78.00 1.24 1.03 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 759.00 12.02 10.01 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 3219.86 51.00 42.47 67.35 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 16.00 0.25 0.21 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 21.00 0.33 0.28 100.0 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 1640.36 25.98 21.63 34.22 MIR17HG-214 lncRNA HT-29 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 1557.00 4.64 20.53 95.52 SNHG32-223 lncRNA HT-29 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 277.00 0.83 3.65 100.0 SNHG32-223 lncRNA HT-29 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 17.00 0.05 0.22 100.0 SNHG32-223 lncRNA HT-29 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 10.00 0.03 0.13 100.0 SNHG32-223 lncRNA HT-29 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 31346.00 93.42 413.41 100.0 SNHG32-223 lncRNA HT-29 (Cell line)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 26.00 0.22 0.34 100.0 SNHG32-227 lncRNA HT-29 (Cell line)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 11252.00 93.42 148.40 96.29 SNHG32-227 lncRNA HT-29 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 27.00 0.22 0.36 100.0 SNHG32-227 lncRNA HT-29 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 15.00 0.12 0.20 100.0 SNHG32-227 lncRNA HT-29 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 41.00 74.55 0.54 100.0 B4GALT1-203 nonsense mediated decay HT-29 (Cell line)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 33.00 6.30 0.44 100.0 ENST00000722183 lncRNA HT-29 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 10.00 1.91 0.13 100.0 ENST00000722183 lncRNA HT-29 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 92.00 17.56 1.21 50.27 ENST00000722183 lncRNA HT-29 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 6.00 60.00 0.08 75.0 THBS3-AS1-228 lncRNA HT-29 (Cell line)