ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 1702.00 93.83 22.45 100.0 RPL23A-207 protein coding HT-29 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 33.00 89.19 0.44 100.0 MIR744-201 miRNA HT-29 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 5.00 50.00 0.07 100.0 MIR378C-201 miRNA HT-29 (Cell line)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 2.00 12.50 0.03 14.29 MIR142HG-201 lncRNA HT-29 (Cell line)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 1.00 6.25 0.01 100.0 MIR142HG-201 lncRNA HT-29 (Cell line)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 398.00 8.88 5.25 100.0 SNORD3C-201 snoRNA HT-29 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 95.61 0.06 1.26 54.63 RPL23A-208 retained intron HT-29 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 71.18 0.04 0.94 50.84 RPL23A-208 retained intron HT-29 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 73798.00 43.15 973.30 59.36 RPL23A-208 retained intron HT-29 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 96225.00 56.27 1269.08 91.74 RPL23A-208 retained intron HT-29 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 518.00 0.54 6.83 19.95 RPL17-211 retained intron HT-29 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 639.00 0.67 8.43 12.53 RPL17-211 retained intron HT-29 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 304.00 0.32 4.01 100.0 RPL17-211 retained intron HT-29 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 62480.00 65.68 824.03 99.41 RPL17-211 retained intron HT-29 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 29452.00 30.96 388.43 99.13 RPL17-211 retained intron HT-29 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 50.00 0.46 0.66 100.0 RPL17-214 retained intron HT-29 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 3017.50 27.48 39.80 33.32 RPL17-214 retained intron HT-29 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 7019.92 63.93 92.58 67.92 RPL17-214 retained intron HT-29 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 3.00 0.00 0.04 100.0 SNORD43-201 snoRNA HT-29 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 108335.00 99.23 1428.79 99.71 SNORD43-201 snoRNA HT-29 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 47.00 0.04 0.62 100.0 SNORD43-201 snoRNA HT-29 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 12.00 66.67 0.16 100.0 MIR151B-201 miRNA HT-29 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 63.00 1.27 0.83 100.0 SNORD3A-201 snoRNA HT-29 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 1527.00 84.88 20.14 100.0 SNORD92-201 snoRNA HT-29 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 309.00 61.43 4.08 100.0 NSRP1-214 protein coding HT-29 (Cell line)