ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 128.00 25.45 1.69 82.58 NSRP1-214 protein coding HT-29 (Cell line)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 492.00 51.46 6.49 100.0 MIR23AHG-201 lncRNA HT-29 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 64.00 6.69 0.84 83.12 MIR23AHG-201 lncRNA HT-29 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 113.00 11.82 1.49 91.87 MIR23AHG-201 lncRNA HT-29 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 45.00 4.71 0.59 88.24 MIR23AHG-201 lncRNA HT-29 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 12.00 1.26 0.16 41.38 MIR23AHG-201 lncRNA HT-29 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 5.00 71.43 0.07 100.0 ODAD3-204 nonsense mediated decay HT-29 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 293.00 5.62 3.86 100.0 VMP1-217 retained intron HT-29 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 135.00 2.59 1.78 100.0 VMP1-217 retained intron HT-29 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 3728.00 71.51 49.17 80.68 VMP1-217 retained intron HT-29 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 196.00 0.03 2.58 100.0 C19orf48P-203 retained intron HT-29 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 311483.60 47.94 4108.05 52.51 C19orf48P-203 retained intron HT-29 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 349790.40 53.84 4613.26 54.81 C19orf48P-203 retained intron HT-29 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 6504.00 1.00 85.78 89.29 C19orf48P-203 retained intron HT-29 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 326.00 0.05 4.30 100.0 C19orf48P-203 retained intron HT-29 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1.00 0.00 0.01 100.0 C19orf48P-203 retained intron HT-29 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 302.00 67.26 3.98 100.0 RPS11-206 retained intron HT-29 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 56.00 12.47 0.74 100.0 RPS11-206 retained intron HT-29 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 171.00 39.68 2.26 100.0 ENST00000602478 lncRNA HT-29 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 1.00 4.76 0.01 100.0 PPFIA1P1-201 processed pseudogene HT-29 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 752.00 98.56 9.92 100.0 MIR98-201 miRNA HT-29 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 13.00 86.67 0.17 100.0 MIR15A-201 miRNA HT-29 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 13.00 29.55 0.17 100.0 SNHG21-206 retained intron HT-29 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 20.00 41.67 0.26 100.0 SNORD11B-201 snoRNA HT-29 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 1067.00 89.44 14.07 100.0 SNORD91B-201 snoRNA HT-29 (Cell line)